PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC304_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 144aa    MW: 15866.3 Da    PI: 10.4919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC304_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-192877255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  RrC304_p3 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 77
               69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132885IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-222886IPR016177DNA-binding domain
SMARTSM003809.1E-392891IPR001471AP2/ERF domain
PRINTSPR003673.5E-92940IPR001471AP2/ERF domain
PfamPF008472.2E-122977IPR001471AP2/ERF domain
CDDcd000182.12E-272987No hitNo description
Gene3DG3DSA:3.30.730.107.7E-312986IPR001471AP2/ERF domain
PRINTSPR003673.5E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
METAREVAAA VPTSTVASAG ATRKREKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PEAAARAYDT AVFYLRGPSA RLNFPELLAG VTVEGGNGGG DMSAAIFLRP TKKKPCRIKE  120
GLKNVYLYDA PGVANMHLHP EFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162785463ATERF1
3gcc_A2e-162785463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325121e-147AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138483.12e-65PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SW632e-49RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLM4DMS62e-65M4DMS6_BRARP; Uncharacterized protein
STRINGBra017811.1-P6e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-45DREB and EAR motif protein 3